9600-1029/02 – Advanced methods of programming of HPC systems (PMHPC)

Gurantor department	IT4Innovations	Credits	6
Subject guarantor	Mgr. Branislav Jansík, Ph.D.	Subject version guarantor	Mgr. Branislav Jansík, Ph.D.
Study level	undergraduate or graduate	Requirement	Compulsory
Year	2	Semester	summer
		Study language	English
Year of introduction	2019/2020	Year of cancellation	2023/2024
Intended for the faculties	FEI	Intended for study types	Follow-up Master

Instruction secured by
Login	Name	Tuitor	Teacher giving lectures
JAN0369	Mgr. Branislav Jansík, Ph.D.

Extent of instruction for forms of study
Form of study	Way of compl.	Extent
Full-time	Examination	2+4

Subject aims expressed by acquired skills and competences

Upon completion of the course the student will be able to: - implement demanding parallel algorithms for hybrid platforms, with a complicated interprocessor communication structure. - practical understand the possibilities and limitations of state-of-the-art parallel programming methods will allow the choice of the optimal algorithm parallelization tool - debug, profile and optimize parallel applications

Teaching methods

Lectures
Seminars
Tutorials

Summary

Compulsory literature:

1. http://upc.lbl.gov UPC Language and Library Specifications, Version 1.3 2. http://mpi-forum.org MPI: A Message-Passing Interface Standard 3. http://openmp.org OpenMP Application Program Interface 4. http://www.gpi-site.com Gaspi: Global Address Space Programming Interface, Specifcation of a PGAS API for communication

Recommended literature:

1. http://docs.it4i.cz Scalasca, Vampir, TotalView, Allinea DDT/MAP/Performance reports

Additional study materials

Study supports in the EduDocs system

Way of continuous check of knowledge in the course of semester

E-learning

Other requirements

Knowledge of the C / C ++ or Fortran programming languages in any version

Prerequisities

Subject code	Abbreviation	Title	Requirement
9600-1028	ZPHPC	Introduction to programming of HPC systems	Recommended

Co-requisities

Subject has no co-requisities.

Subject syllabus:

1. OpenMP 4.0 standard, task based programming 2. MPI 3.0 standard, working with intercoms, MPI - IO, MPI one-sided communication GPI-2 standard, one-sided communication, extremely parallel algorithms, failure mechanism 4. Unified Parallel C, PGAS standard, programming with Berkley UPC, shared shared memory. 5. Tuning and profiling of parallel applications 6. OpenMP 4.5 Standard, Accelerator Programming

Conditions for subject completion

Full-time form (validity from: 2019/2020 Winter semester, validity until: 2023/2024 Summer semester)

Task name	Type of task	Max. number of points (act. for subtasks)	Min. number of points	Max. počet pokusů
Examination	Examination	100	51	3

Mandatory attendence participation: Attendance on exercises. Elaboration of a project.

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Conditions for subject completion and attendance at the exercises within ISP: Completion of all mandatory tasks within individually agreed deadlines.

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Occurrence in study plans

Academic year	Programme	Branch/spec.	Zaměření	Form	Study language	Tut. centre	Year	Type of duty
2021/2022	(N0541A170008) Computational and Applied Mathematics	(S02) Computational Methods and HPC	VM	P	English	Ostrava	2	Compulsory	study plan
2020/2021	(N0541A170008) Computational and Applied Mathematics	(S02) Computational Methods and HPC	VM	P	English	Ostrava	2	Compulsory	study plan
2019/2020	(N0541A170008) Computational and Applied Mathematics	(S02) Computational Methods and HPC	VM	P	English	Ostrava	2	Compulsory	study plan

Occurrence in special blocks

Block name	Academic year	Form of study	Study language	Year	W	S	Type of block	Block owner

Assessment of instruction

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